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Species belonging to selected taxon:

Populus trichocarpa



ABOUT THIS RECORD

ID: MNEST041379
species: Populus trichocarpa
miRNA family: MIR169_1
source: miRBase, original name: ptc-MIR169y (MI0002275)

Taxonomy by NCBI:
Populus trichocarpa Populus Saliceae Salicaceae Malpighiales fabids rosids core eudicotyledons eudicotyledons Magnoliophyta Spermatophyta Euphyllophyta Tracheophyta Embryophyta Streptophytina Streptophyta Viridiplantae Eukaryota cellular organisms






SEQUENCE & STRUCTURE
miRNA
TAGCCATGGATGAATTGCCTG

miRNA*
GGCAGTCATCAGCTTGGCTAACT

mismatches: 2
bulges: 4

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pre-miRNA
TCTTGTTTAGTAGCCATGGATGAATTGCCTGCTTCCAAAATGAGGTGTCAAGCCGAGATAAACATACAAGTTTGATCCCTCATTGGGGTTCCCAGGCAGT
CATCAGCTTGGCTAACT
TGACAG


dot-bracket secondary structure
...((((.((((((((..(((((.(((((((...((..(((((((..((((((................))))))..)))))))..))....))))))))
))))....))))).)))
.)))).



SIMILARITIES
miRBase bna-MIR169l: 0.00002

PMRD ptc-miR169y: 1e-65

microPC no hits
UniProt no hits

RFAM MIR169_5: 2e-64

Identical with: ptc-miR169y from PMRD (MNEST051682)

MORE

miRNEST target predictions
non-miRNEST targets
HuntMi prediction: true miRNA
additional data
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references

[1] Tuskan GA, Difazio S, Jansson S, Bohlmann J, Grigoriev I, Hellsten U, Putnam N, Ralph S, Rombauts S, Salamov A, Schein J, Sterck L, Aerts A, Bhalerao RR, Bhalerao RP, Blaudez D, Boerjan W, Brun A, Brunner A, Busov V, Campbell M, Carlson J, Chalot M, Chapm, Science. 313:1596-1604(2006)., "The genome of black cottonwood, Populus trichocarpa (Torr. & Gray)"




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